Experiment | |
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Method _exptl.method | X-RAY DIFFRACTION The method used in the experiment. |
Experimental protocol _diffrn_radiation.pdbx_diffrn_protocol | SINGLE WAVELENGTH SINGLE WAVELENGTH, LAUE, or MAD. |
Source type _diffrn_source.source | SYNCHROTRON The general class of the radiation source. |
Source details _diffrn_source.type | SPRING-8 BEAMLINE BL32XU The make, model or name of the source of radiation. |
Synchrotron site _diffrn_source.pdbx_synchrotron_site | SPring-8 Synchrotron site. |
Beamline _diffrn_source.pdbx_synchrotron_beamline | BL32XU Synchrotron beamline. |
Temperature [K] _diffrn.ambient_temp | 100 The mean temperature in kelvins at which the intensities were |
Detector technology _diffrn_detector.detector | PIXEL The general class of the radiation detector. |
Collection date _diffrn_detector.pdbx_collection_date | 2018-06-09 The date of data collection. |
Detector _diffrn_detector.type | DECTRIS EIGER X 9M The make, model or name of the detector device used. |
Wavelength(s) [Å] _diffrn_source.pdbx_wavelength_list | 1.0 Comma separated list of wavelengths or wavelength range. |
Software | |
Data processing #1 _software.classification | autoPROC (1.0.5) The classification of the program according to its |
Data processing #2 _software.classification | STARANISO (2.3.36) The classification of the program according to its |
Data processing #3 _software.classification | XDS (Jan 31, 2020 BUILT=20200417) The classification of the program according to its |
Data reduction #1 _software.classification | pointless (1.12.2) The classification of the program according to its |
Data reduction #2 _software.classification | Aimless (0.7.4) The classification of the program according to its |
Phasing _software.classification | MOLREP (11.7.03) The classification of the program according to its |
Model building _software.classification | Coot (0.9) The classification of the program according to its |
Refinement _software.classification | PHENIX (1.19rc1_4016) The classification of the program according to its |
General information | |
Spacegroup name _symmetry.space_group_name_H-M | C 1 2 1 Hermann-Mauguin space-group symbol. Note that the |
Unit cell parameters _cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma} | 163.452 Unit-cell length a corresponding to the structure reported in 53.048 Unit-cell length b corresponding to the structure reported in 54.313 Unit-cell length c corresponding to the structure reported in 90.000 Unit-cell angle alpha of the reported structure in degrees. 105.047 Unit-cell angle beta of the reported structure in degrees. 90.000 Unit-cell angle gamma of the reported structure in degrees. |
Wavelength _diffrn_radiation_wavelength.wavelength | 1.00000 ÅThe radiation wavelength in angstroms. |
Data quality metrics | Overall | OuterShell |
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Low resolution limit [Å] _reflns.d_resolution_low _reflns_shell.d_res_low | 78.924 The largest value in angstroms for the interplanar spacings | 1.194 The highest value in angstroms for the interplanar spacings |
High resolution limit [Å] _reflns.d_resolution_high _reflns_shell.d_res_high | 1.123 The smallest value in angstroms for the interplanar spacings | 1.123 The smallest value in angstroms for the interplanar spacings |
Rmerge | - | - |
Rmeas | - | - |
Rpim | - | - |
Total number of observations | - | - |
Total number unique _reflns.number_obs _reflns_shell.number_unique_obs | 139276 The number of reflections in the REFLN list (not the DIFFRN_REFLN | 6905 The total number of measured reflections classified as 'observed' |
<I/σ(I)> _reflns.pdbx_netI_over_sigmaI | 13.50 The mean of the ratio of the intensities to their | - |
Completeness [%] _reflns.percent_possible_obs | 81.6 The percentage of geometrically possible reflections represented | - |
Multiplicity _reflns.pdbx_redundancy | 4.8 Overall redundancy for this data set. | - |
CC(1/2) _reflns.pdbx_CC_half _reflns_shell.pdbx_CC_half | 0.999 The Pearson's correlation coefficient expressed as a decimal value | 0.575 The Pearson's correlation coefficient expressed as a decimal value |
Refinement | |
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PDB entry ID _entry.id | 7D9Z |
Deposition date _pdbx_database_status.recvd_initial_deposition_date | 2020-10-14 |
Resolution _refine.ls_d_res_low _refine.ls_d_res_high | 36.4 - 1.123 Å |
Rwork/Rfree _refine.ls_R_factor_R_work _refine.ls_R_factor_R_free | 0.1209 / 0.1503 |
Structure solution method _refine.pdbx_method_to_determine_struct | MOLECULAR REPLACEMENT |
Starting model (for MR) _refine.pdbx_starting_model | 4ma3 |