Data quality metrics extracted from 4d9x.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 4D9X at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SEALED TUBE
Source details
_diffrn_source.type
OXFORD DIFFRACTION ENHANCE ULTRA
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2010-08-09
Detector
_diffrn_detector.type
OXFORD
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.542
Software
Data collection
_software.classification
CrysalisPro
Data reduction
_software.classification
XDS
Data scaling #1
_software.classification
XSCALE (Wolfgang Kabsch)
Data scaling #2
_software.classification
XDS
Phasing
_software.classification
MOLREP (Alexei Vaguine; alexei@ysbl.york.ac.uk)
Refinement
_software.classification
REFMAC (Garib N. Murshudov; garib@ysbl.york.ac.uk)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 32 2 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
30.282 30.282 118.330 90.0 90.0 120.0
Wavelength
_diffrn_radiation_wavelength.wavelength
1.54200 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
30.000 30.000 2.590
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.440 7.090 2.440
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.108 0.067 0.611
  Rmeas - - -
  Rpim - - -
Total number of observations
_reflns_shell.number_measured_obs
- 1462 5437
Total number unique
_reflns.number_obs _reflns_shell.number_unique_obs
2642 136 404
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
17.48 28.82 4.01
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
99.5 99.3 97.3
  Multiplicity - - -
  CC(1/2) - - -

Refinement
PDB entry ID
_entry.id
4D9X
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2012-01-12
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
30.0 - 2.440 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2614 / 0.3074
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
PDB ENTRY 3NP6