Data quality metrics extracted from 3d9b.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 3D9B at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
ESRF BEAMLINE ID23-1
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
ESRF
Beamline
_diffrn_source.pdbx_synchrotron_beamline
ID23-1
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2007-12-10
Detector
_diffrn_detector.type
ADSC QUANTUM 315
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.97980
Software
Data collection
_software.classification
ADSC (Quantum)
Data reduction
_software.classification
XDS
Data scaling
_software.classification
XSCALE
Phasing
_software.classification
MOLREP
Refinement
_software.classification
REFMAC (5.2.0019)
General information
Spacegroup name
_symmetry.space_group_name_H-M
H 3 2
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
145.74 145.74 514.00 90.0 90.0 120.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97980 Å

Data quality metricsOverall
Low resolution limit [Å]
_reflns.d_resolution_low
20.000
High resolution limit [Å]
_reflns.d_resolution_high
3.420
Rmerge
_reflns.pdbx_Rmerge_I_obs
0.124
  Rmeas -
  Rpim -
  Total number of observations -
Total number unique
_reflns.number_obs
28788
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
11.97
Completeness [%]
_reflns.percent_possible_obs
99.3
Multiplicity
_reflns.pdbx_redundancy
6.1
  CC(1/2) -

Refinement
PDB entry ID
_entry.id
3D9B
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2008-05-27
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
20.0 - 3.420 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2885 / 0.3546
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
PDB entry 2I6W