Data quality metrics extracted from 7d8t.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 7D8T at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
APS BEAMLINE 21-ID-F
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
APS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
21-ID-F
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2012-04-26
Detector
_diffrn_detector.type
MARMOSAIC 225 mm CCD
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.97857
Software
Data reduction
_software.classification
HKL-2000
Data scaling
_software.classification
SCALA (3.3.20)
Phasing
_software.classification
MOLREP
Refinement
_software.classification
PHENIX (1.13_2998)
General information
Spacegroup name
_symmetry.space_group_name_H-M
H 3 2
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
207.26 207.26 163.16 90.0 90.0 120.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97857 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
120.734 48.158 3.370
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
3.200 10.120 3.200
Rmerge
_reflns.pdbx_Rsym_value _reflns_shell.Rmerge_I_obs
0.133 0.076 0.901
Rmeas
_reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all
0.140 0.081 0.944
Rpim
_reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all
0.042 0.026 0.281
Total number of observations
_reflns.pdbx_number_measured_all _reflns_shell.number_measured_all
251159 7249 36598
Total number unique
_reflns.number_obs _reflns_shell.number_unique_obs
22309 746 3223
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
10.60 7.20 0.80
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
100.0 99.1 100.0
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
11.3 9.7 11.4
  CC(1/2) - - -

Refinement
PDB entry ID
_entry.id
7D8T
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2020-10-09
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
19.8 - 3.201 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2040 / 0.2341
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
7D8S