Data quality metrics extracted from 4d8k.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 4D8K at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
ALS BEAMLINE 8.2.2
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
ALS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
8.2.2
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2011-10-16
Detector
_diffrn_detector.type
ADSC QUANTUM 315
Software
Data reduction
_software.classification
MOSFLM
Data scaling
_software.classification
SCALA (3.3.20; Phil Evans; pre@mrc-lmb.cam.ac.uk)
Phasing
_software.classification
PHASER (2.3.0; Randy J. Read; cimr-phaser@lists.cam.ac.uk)
Model building
_software.classification
MolProbity (3beta29; D.C. & J.S. Richardson lab; molprobity@kinemage.biochem.duke.edu)
Refinement
_software.classification
PHENIX (1.7.2; P.D. Adams; PDAdams@lbl.gov)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 31 2 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
68.899 68.899 80.283 90.0 90.0 120.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97950 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
29.834 29.834 2.420
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.360 10.550 2.360
Rmerge
_reflns.pdbx_Rsym_value _reflns_shell.Rmerge_I_obs
0.129 0.024 0.865
  Rmeas - - -
  Rpim - - -
Total number of observations
_reflns_shell.number_measured_all
- 527 3254
Total number unique
_reflns.number_obs _reflns_shell.number_unique_all
9434 127 674
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
9.30 23.90 0.90
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
99.9 95.5 100.0
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
4.9 4.1 4.8
  CC(1/2) - - -

Refinement
PDB entry ID
_entry.id
4D8K
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2012-01-10
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
29.8 - 2.360 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1911 / 0.2513
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
WARNING: no starting model (for MR) given