Data quality metrics extracted from 4d8h.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 4D8H at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
ROTATING ANODE
Source details
_diffrn_source.type
RIGAKU
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
IMAGE PLATE
Collection date
_diffrn_detector.pdbx_collection_date
2011-12-10
Detector
_diffrn_detector.type
RIGAKU RAXIS IV++
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.541
Software
Data collection
_software.classification
CrystalClear
Data reduction
_software.classification
DENZO
Data scaling
_software.classification
SCALEPACK (Zbyszek Otwinowski; hkl@hkl-xray.com)
Phasing
_software.classification
PHASES
Refinement
_software.classification
PHENIX (1.7.2_869; Paul D. Adams; PDAdams@lbl.gov)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 21 21 21
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
46.584 48.696 64.876 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
1.54100 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
20.000 20.000 1.960
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.900 4.340 1.900
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.095 0.059 0.342
  Rmeas - - -
  Rpim - - -
  Total number of observations - - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_all
11803 1110 756
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
11.20 - -
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
97.2 100.0 76.2
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
12.3 12.8 5.8
  CC(1/2) - - -

Refinement
PDB entry ID
_entry.id
4D8H
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2012-01-10
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
20.0 - 1.901 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1647 / 0.2139
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
WARNING: no starting model (for MR) given