Data quality metrics extracted from 3d87.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 3D87 at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
APS BEAMLINE 17-BM
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
APS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
17-BM
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2006-12-12
Detector
_diffrn_detector.type
MAR CCD 165 mm
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.0
Software
Data collection
_software.classification
ADSC (Quantum)
Data reduction
_software.classification
HKL-2000
Data scaling
_software.classification
HKL-2000
Phasing
_software.classification
AMoRE
Refinement
_software.classification
BUSTER-TNT (2.1.1)
General information
Spacegroup name
_symmetry.space_group_name_H-M
C 2 2 21
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
110.098 240.587 141.781 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
1.00000 Å

Data quality metricsOverall
Low resolution limit [Å]
_reflns.d_resolution_low
20.390
High resolution limit [Å]
_reflns.d_resolution_high
2.900
Rmerge
_reflns.pdbx_Rmerge_I_obs
0.100
  Rmeas -
  Rpim -
  Total number of observations -
Total number unique
_reflns.number_obs
41680
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
9.80
Completeness [%]
_reflns.percent_possible_obs
93.5
Multiplicity
_reflns.pdbx_redundancy
3.8
  CC(1/2) -

Refinement
PDB entry ID
_entry.id
3D87
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2008-05-22
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
20.4 - 2.900 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2675 / 0.3232
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
3d85