Data quality metrics extracted from 5d7c.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5D7C at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
ROTATING ANODE
Source details
_diffrn_source.type
RIGAKU MICROMAX-007 HF
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
IMAGE PLATE
Collection date
_diffrn_detector.pdbx_collection_date
2010-09-02
Detector
_diffrn_detector.type
RIGAKU RAXIS IV++
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.5418
Software
Data reduction
_software.classification
d*TREK
Data scaling
_software.classification
d*TREK (9.9.8.6 W9RSSI)
Phasing
_software.classification
MOLREP (10.2.35)
Refinement
_software.classification
REFMAC (5.8.0103)
General information
Spacegroup name
_symmetry.space_group_name_H-M
C 1 2 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
142.803 55.485 51.422 90.00 100.77 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
1.54180 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
45.190 45.190 1.610
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.550 3.340 1.550
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.044 0.041 0.248
  Rmeas - - -
  Rpim - - -
Total number of observations
_reflns.pdbx_number_measured_all _reflns_shell.number_measured_all
132107 14537 8680
Total number unique
_reflns.number_obs _reflns_shell.number_unique_all
55678 5486 4557
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
11.80 32.10 3.70
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
96.8 93.3 79.3
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
2.4 2.5 1.9
  CC(1/2) - - -

Refinement
PDB entry ID
_entry.id
5D7C
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2015-08-13
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
37.8 - 1.550 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1712 / 0.1993
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
1KZN