Data quality metrics extracted from 9d6u.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 9D6U at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
NSLS-II BEAMLINE 17-ID-1
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
NSLS-II
Beamline
_diffrn_source.pdbx_synchrotron_beamline
17-ID-1
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2023-09-23
Detector
_diffrn_detector.type
DECTRIS EIGER X 9M
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.007428
Software
Data reduction
_software.classification
autoPROC
Data scaling
_software.classification
STARANISO
Phasing
_software.classification
AutoSol
Refinement
_software.classification
PHENIX (1.20.1_4487)
General information
Spacegroup name
_symmetry.space_group_name_H-M
H 3
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
106.433 106.433 93.032 90.0 90.0 120.0
Wavelength
_diffrn_radiation_wavelength.wavelength
1.00743 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
19.344 19.344 4.676
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
4.208 9.796 4.208
  Rmerge - - -
  Rmeas - - -
  Rpim - - -
  Total number of observations - - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_obs
3811 192 192
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
8.20 - -
Completeness [%]
_reflns.percent_possible_obs
86.8 - -
Multiplicity
_reflns.pdbx_redundancy
5.0 - -
CC(1/2)
_reflns.pdbx_CC_half _reflns_shell.pdbx_CC_half
0.993 0.990 0.253

Refinement
PDB entry ID
_entry.id
9D6U
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2024-08-15
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
19.3 - 4.210 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1735 / 0.2219
Structure solution method
_refine.pdbx_method_to_determine_struct
SAD