Data quality metrics extracted from 3d62.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 3D62 at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
NSLS BEAMLINE X6A
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
NSLS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
X6A
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2007-06-07
Detector
_diffrn_detector.type
ADSC QUANTUM 210
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.9537
Software
Data collection
_software.classification
Blu-Ice
Data reduction
_software.classification
DENZO
Data scaling #1
_software.classification
SCALEPACK
Data scaling #2
_software.classification
HKL-2000
Phasing
_software.classification
AMoRE
Refinement
_software.classification
REFMAC (Murshudov, G.N.; ccp4@dl.ac.uk)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 21 21 2
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
106.668 45.160 53.967 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.95370 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
50.000 2.800
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.700 2.700
Rmerge
_reflns.pdbx_Rsym_value _reflns_shell.pdbx_Rsym_value
0.077 0.505
  Rmeas - -
  Rpim - -
  Total number of observations - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_all
7556 719
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
11.30 -
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
98.8 98.4
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
5.0 5.7
  CC(1/2) - -

Refinement
PDB entry ID
_entry.id
3D62
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2008-05-18
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
34.5 - 2.700 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2590 / 0.3630