Data quality metrics extracted from 6d5b.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 6D5B at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
ROTATING ANODE
Source details
_diffrn_source.type
BRUKER AXS MICROSTAR
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2016-06-06
Detector
_diffrn_detector.type
Bruker Platinum 135
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.5418
Software
Data reduction
_software.classification
SAINT
Data scaling
_software.classification
PROTEUM PLUS
Phasing
_software.classification
MOLREP
Refinement
_software.classification
REFMAC (5.8.0158)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
86.167 86.199 86.567 83.87 83.93 60.55
Wavelength
_diffrn_radiation_wavelength.wavelength
1.54180 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
50.000 2.100
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.000 2.000
Rmerge
_reflns.pdbx_Rsym_value
0.123 -
  Rmeas - -
Rpim
_reflns_shell.pdbx_Rpim_I_all
- 0.728
  Total number of observations - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_obs
144145 19299
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
7.64 1.07
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
99.1 97.5
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
5.2 3.7
  CC(1/2) - -

Refinement
PDB entry ID
_entry.id
6D5B
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2018-04-19
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
85.9 - 2.000 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1780 / 0.2427
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
PDB entry 3ZQW