Data quality metrics extracted from 6d54.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 6D54 at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Method
_exptl.method
NEUTRON DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
LAUE
Source type
_diffrn_source.source
NUCLEAR REACTOR
Source details
_diffrn_source.type
ILL BEAMLINE LADI III
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
ILL
Beamline
_diffrn_source.pdbx_synchrotron_beamline
LADI III
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
IMAGE PLATE
Collection date
_diffrn_detector.pdbx_collection_date
2017-11-20
Detector
_diffrn_detector.type
LADI III
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
2.8-4.0
Software
Data reduction #1
_software.classification
HKL-3000
Data reduction #2
_software.classification
LAUEGEN
Data scaling #1
_software.classification
HKL-3000
Data scaling #2
_software.classification
LSCALE
Phasing #1
_software.classification
PHASER
Phasing #2
_software.classification
CNS
Refinement
_software.classification
nCNS (1.0.0)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 43 21 2
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
41.884 41.884 24.307 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
1.540002.800004.00000 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
40.000 2.000 1.710
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.650 1.900 1.650
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.056 0.226 0.149
  Rmeas - - -
  Rpim - - -
  Total number of observations - - -
Total number unique
_reflns.number_obs
2866 - -
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.pdbx_netI_over_sigmaI_obs
16.60 5.30 16.60
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
100.0 66.0 100.0
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
10.4 3.4 10.2
  CC(1/2) - - -

Refinement
PDB entry ID
_entry.id
6D54
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2018-04-19
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
21.3 - 1.900 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2340 / 0.2600
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
PDB entry 4FP6