Data quality metrics extracted from 4d5m.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 4D5M at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
SOLEIL BEAMLINE PROXIMA 1
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
SOLEIL
Beamline
_diffrn_source.pdbx_synchrotron_beamline
PROXIMA 1
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2011-07-06
Detector
_diffrn_detector.type
ADSC QUANTUM 315r
Software
Data reduction
_software.classification
XDS
Data scaling
_software.classification
XSCALE
Phasing
_software.classification
SHELXD
Refinement
_software.classification
REFMAC (5.8.0073)
General information
Spacegroup name
_symmetry.space_group_name_H-M
C 1 2 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
84.90 27.47 13.15 90.00 98.83 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
0.78471 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
41.950 0.870
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
0.850 0.850
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.070 0.200
  Rmeas - -
  Rpim - -
  Total number of observations - -
Total number unique
_reflns.number_obs
24802 -
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
25.60 5.40
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
98.6 88.0
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
26.6 6.3
  CC(1/2) - -

Refinement
PDB entry ID
_entry.id
4D5M
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2014-11-05
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
42.0 - 0.850 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.0800 / 0.0874
Structure solution method
_refine.pdbx_method_to_determine_struct
DIRECT METHODS
Starting model
_refine.pdbx_starting_model
NONE