Data quality metrics extracted from 3d4c.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 3D4C at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
ESRF BEAMLINE BM14
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
ESRF
Beamline
_diffrn_source.pdbx_synchrotron_beamline
BM14
Temperature [K]
_diffrn.ambient_temp
100.0
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2006-12-06
Detector
_diffrn_detector.type
MAR CCD 165 mm
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.95350
Software
Data collection
_software.classification
MxCuBE
Data reduction
_software.classification
XDS
Data scaling
_software.classification
XDS
Phasing
_software.classification
PHASER
Refinement
_software.classification
PHENIX
General information
Spacegroup name
_symmetry.space_group_name_H-M
I 2 2 2
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
93.04 95.12 141.70 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.95350 Å

Data quality metricsOverall
Low resolution limit [Å]
_reflns.d_resolution_low
16.500
High resolution limit [Å]
_reflns.d_resolution_high
2.900
Rmerge
_reflns.pdbx_Rsym_value
0.047
  Rmeas -
  Rpim -
  Total number of observations -
Total number unique
_reflns.number_obs
14196
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
33.10
Completeness [%]
_reflns.percent_possible_obs
99.3
Multiplicity
_reflns.pdbx_redundancy
11.1
  CC(1/2) -

Refinement
PDB entry ID
_entry.id
3D4C
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2008-05-14
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
16.5 - 2.900 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1900 / 0.2272
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
ENSEMBLE DERIVED FROM PDB ENTRIES 1MG1 (chain A), 1NMU (chain C), 1T0K (chain A), 1YTV (chain B), 3MBP (chain A), 4MBP (chain A)