Data quality metrics extracted from 5d3q.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5D3Q at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
PETRA III, DESY BEAMLINE P11
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
PETRA III, DESY
Beamline
_diffrn_source.pdbx_synchrotron_beamline
P11
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2013-03-12
Detector
_diffrn_detector.type
PSI PILATUS 6M
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.033
Software
Data reduction
_software.classification
XDS
Data scaling
_software.classification
XSCALE
Phasing
_software.classification
PHASER
Model building
_software.classification
Coot
Refinement
_software.classification
PHENIX (1.10_2155: ???)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
44.22 49.96 82.52 99.40 87.18 105.18
Wavelength
_diffrn_radiation_wavelength.wavelength
1.03300 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
47.626 1.800
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.700 1.700
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.118 0.245
  Rmeas - -
  Rpim - -
  Total number of observations - -
Total number unique
_reflns.number_obs
72213 -
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
10.75 6.70
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
97.6 96.1
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
4.6 3.9
  CC(1/2) - -

Refinement
PDB entry ID
_entry.id
5D3Q
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2015-08-06
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
47.6 - 1.700 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1727 / 0.2055
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
2x2e