Data quality metrics extracted from 3d3b.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 3D3B at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
SLS BEAMLINE X10SA
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
SLS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
X10SA
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2006-11-30
Detector
_diffrn_detector.type
MARMOSAIC 225 mm CCD
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.9051
Software
Data collection
_software.classification
MAR345dtb
Data reduction
_software.classification
XDS
Data scaling
_software.classification
XDS
Phasing
_software.classification
MOLREP
Refinement
_software.classification
REFMAC (5.2.0019)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 21 21 21
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
40.74 48.99 112.77 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.90510 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
30.000 1.400
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.300 1.300
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.074 0.648
  Rmeas - -
  Rpim - -
  Total number of observations - -
Total number unique
_reflns.number_obs
56411 -
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
17.50 5.30
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
100.0 100.0
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
15.3 14.6
  CC(1/2) - -

Refinement
PDB entry ID
_entry.id
3D3B
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2008-05-09
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
20.0 - 1.300 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1735 / 0.2045
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
PDB ID 1TZV and PDB ID 1J5E (chain J)