Data quality metrics extracted from 3d2d.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 3D2D at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
EMBL/DESY, HAMBURG BEAMLINE X11
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
EMBL/DESY, HAMBURG
Beamline
_diffrn_source.pdbx_synchrotron_beamline
X11
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2007-10-20
Detector
_diffrn_detector.type
MAR CCD 165 mm
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.8010
Software
Data collection
_software.classification
MAR345dtb
Data reduction
_software.classification
DENZO
Data scaling
_software.classification
SCALEPACK
Phasing
_software.classification
PHASER
Refinement
_software.classification
PHENIX
General information
Spacegroup name
_symmetry.space_group_name_H-M
C 1 2 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
98.938 93.649 63.155 90.00 100.62 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
0.80100 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
26.300 2.850
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.796 2.796
Rmerge
_reflns.pdbx_Rsym_value _reflns_shell.pdbx_Rsym_value
0.115 0.424
  Rmeas - -
  Rpim - -
  Total number of observations - -
Total number unique
_reflns.number_obs
12513 -
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
7.80 2.20
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
88.9 91.3
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
2.9 2.9
  CC(1/2) - -

Refinement
PDB entry ID
_entry.id
3D2D
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2008-05-08
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
26.2 - 2.796 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1877 / 0.2406
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
WARNING: no starting model (for MR) given