Data quality metrics extracted from 3d1a.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 3D1A at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
ROTATING ANODE
Source details
_diffrn_source.type
RIGAKU
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
IMAGE PLATE
Collection date
_diffrn_detector.pdbx_collection_date
2008-03-06
Detector
_diffrn_detector.type
MAR scanner 345 mm plate
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.54179
Software
Data collection
_software.classification
MAR345dtb
Data reduction
_software.classification
AUTOMAR
Data scaling
_software.classification
SCALEPACK
Phasing
_software.classification
AMoRE
Refinement
_software.classification
REFMAC (5.2.0019)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 21 21 21
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
53.402 67.138 153.454 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
1.54179 Å

Data quality metricsOverall
Low resolution limit [Å]
_reflns.d_resolution_low
14.960
High resolution limit [Å]
_reflns.d_resolution_high
2.500
Rmerge
_reflns.pdbx_Rmerge_I_obs
0.054
  Rmeas -
  Rpim -
  Total number of observations -
Total number unique
_reflns.number_obs
18937
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
7.60
  Completeness [%] -
Multiplicity
_reflns.pdbx_redundancy
3.2
  CC(1/2) -

Refinement
PDB entry ID
_entry.id
3D1A
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2008-05-05
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
14.8 - 2.610 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2168 / 0.2575
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
PDB entry 1G08