Data quality metrics extracted from 3d0o.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 3D0O at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
NSLS BEAMLINE X29A
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
NSLS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
X29A
Collection date
_diffrn_detector.pdbx_collection_date
2008-04-28
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.0809
Software
Data collection
_software.classification
HKL-2000
Data reduction #1
_software.classification
DENZO (Zbyszek Otwinowski; zbyszek@mix.swmed.edu)
Data reduction #2
_software.classification
HKL-2000
Data scaling #1
_software.classification
SCALEPACK (Zbyszek Otwinowski; zbyszek@mix.swmed.edu)
Data scaling #2
_software.classification
HKL-2000
Phasing
_software.classification
MOLREP (A. Vagin; alexei@ysbl.york.ac.uk)
Refinement
_software.classification
REFMAC (5.4.0069; Murshudov, G.N.; ccp4@dl.ac.uk)
General information
Spacegroup name
_symmetry.space_group_name_H-M
C 1 2 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
131.765 74.503 96.306 90.00 129.07 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
1.08090 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
50.000 50.000 1.760
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.700 3.660 1.700
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.084 0.070 0.259
  Rmeas - - -
  Rpim - - -
  Total number of observations - - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_all
75432 7945 5351
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
7.70 - -
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
94.6 97.8 67.1
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
2.8 3.1 1.6
  CC(1/2) - - -

Refinement
PDB entry ID
_entry.id
3D0O
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2008-05-02
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
29.4 - 1.800 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1700 / 0.2030
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
WARNING: no starting model (for MR) given