Data quality metrics extracted from 6cpd.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 6CPD at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
APS BEAMLINE 23-ID-B
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
APS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
23-ID-B
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2015-10-12
Detector
_diffrn_detector.type
MARMOSAIC 300 mm CCD
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.37716
Software
Data reduction
_software.classification
HKL-2000 (2.3.10)
Data scaling
_software.classification
HKL-2000 (2.3.10)
Phasing
_software.classification
PHENIX (1.8.3_1479)
Refinement
_software.classification
PHENIX (1.8.3_1479)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 32 2 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
83.255 83.255 70.963 90.0 90.0 120.0
Wavelength
_diffrn_radiation_wavelength.wavelength
1.37716 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
50.000 1.970
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.900 1.900
  Rmerge - -
Rmeas
_reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all
0.082 0.873
Rpim
_reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all
0.015 0.269
  Total number of observations - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_obs
22042 1839
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
37.16 2.85
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
97.2 82.9
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
27.5 10.0
CC(1/2)
_reflns_shell.pdbx_CC_half
- 0.820

Refinement
PDB entry ID
_entry.id
6CPD
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2018-03-13
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
35.9 - 1.903 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1719 / 0.2089
Structure solution method
_refine.pdbx_method_to_determine_struct
SAD