Data quality metrics extracted from 5cim.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5CIM at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
DIAMOND BEAMLINE I04
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
Diamond
Beamline
_diffrn_source.pdbx_synchrotron_beamline
I04
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2013-12-11
Detector
_diffrn_detector.type
DECTRIS PILATUS 6M-F
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.9795
Software
Data reduction
_software.classification
XDS
Data scaling
_software.classification
SCALA (3.3.20)
Phasing
_software.classification
PHASER
Refinement
_software.classification
BUSTER-TNT (BUSTER 2.10.0)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 21 21 21
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
77.537 112.967 221.433 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97950 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
221.433 221.433 3.500
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
3.318 10.490 3.318
Rmerge
_reflns.pdbx_Rsym_value _reflns_shell.Rmerge_I_obs
0.083 0.018 0.597
Rmeas
_reflns.pdbx_Rrim_I_all
0.103 - -
Rpim
_reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all
0.045 0.011 0.318
Total number of observations
_reflns.pdbx_number_measured_all _reflns_shell.number_measured_all
149129 4539 22179
Total number unique
_reflns.number_obs _reflns_shell.number_unique_all
29571 1047 4256
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
16.00 30.20 1.30
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
99.8 98.7 99.8
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
5.0 4.3 5.2
  CC(1/2) - - -

Refinement
PDB entry ID
_entry.id
5CIM
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2015-07-13
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
100.6 - 3.320 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1783 / 0.2137
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
5CGM