Data quality metrics extracted from 3chd.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 3CHD at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
ESRF BEAMLINE ID14-2
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
ESRF
Beamline
_diffrn_source.pdbx_synchrotron_beamline
ID14-2
Temperature [K]
_diffrn.ambient_temp
173
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2006-02-19
Detector
_diffrn_detector.type
ADSC QUANTUM 4
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.933
Software
Data collection
_software.classification
ADSC (Quantum)
Data reduction
_software.classification
DENZO
Data scaling
_software.classification
SCALEPACK
Phasing
_software.classification
PHASES (from pdb entry 1W9P)
Refinement
_software.classification
CNS (1.0)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 41
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
117.067 117.067 99.953 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.93300 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
20.000 2.070
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.000 2.000
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.106 0.491
  Rmeas - -
  Rpim - -
  Total number of observations - -
Total number unique
_reflns.number_obs
89613 -
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
16.20 2.50
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
98.6 96.0
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
3.6 3.3
  CC(1/2) - -

Refinement
PDB entry ID
_entry.id
3CHD
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2008-03-09
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
20.0 - 2.000 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1770 / 0.2150
Structure solution method
_refine.pdbx_method_to_determine_struct
Known phases
Starting model
_refine.pdbx_starting_model
PDB entry 1W9V