Data quality metrics extracted from 1cd5.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 1CD5 at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
SSRL BEAMLINE BL7-1
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
SSRL
Beamline
_diffrn_source.pdbx_synchrotron_beamline
BL7-1
Temperature [K]
_diffrn.ambient_temp
277
Collection date
_diffrn_detector.pdbx_collection_date
1998-01-15
Software
Data reduction
_software.classification
DENZO
Data scaling #1
_software.classification
CCP4 (AGROVATA
Data scaling #2
_software.classification
SCALA
Phasing #1
_software.classification
AMoRE
Phasing #2
_software.classification
X-PLOR
Model building
_software.classification
X-PLOR
Refinement
_software.classification
X-PLOR (3.1)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 63 2 2
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
129.81 129.81 139.11 90.0 90.0 120.0
Wavelength
_diffrn_radiation_wavelength.wavelength
1.07000 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
50.000 2.400
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.300 2.300
Rmerge
_reflns.pdbx_Rsym_value _reflns_shell.pdbx_Rsym_value
7.000 34.000
  Rmeas - -
  Rpim - -
  Total number of observations - -
Total number unique
_reflns.number_obs
30597 -
<I/σ(I)>
_reflns_shell.meanI_over_sigI_obs
- 1.60
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
98.0 98.0
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
3.0 3.0
  CC(1/2) - -

Refinement
PDB entry ID
_entry.id
1CD5
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
1999-03-05
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
8.0 - 2.300 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2070 / 0.2520
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
PDB ENTRY 1DEA