Data quality metrics extracted from 6ccd.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 6CCD at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
ALS BEAMLINE 8.3.1
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
ALS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
8.3.1
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2004-06-24
Detector
_diffrn_detector.type
ADSC QUANTUM 210
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.1159
Software
Data reduction
_software.classification
XDS (0.47 (08-Jul-2014))
Data scaling
_software.classification
Aimless (Version 0.1.27)
Phasing
_software.classification
PHASER
Refinement
_software.classification
PHENIX (1.9_1692)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 32 2 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
58.922 58.922 68.632 90.0 90.0 120.0
Wavelength
_diffrn_radiation_wavelength.wavelength
1.11590 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
68.630 68.630 1.840
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.800 9.000 1.800
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.069 0.024 0.822
Rmeas
_reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all
0.073 0.025 0.920
Rpim
_reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all
0.031 0.008 0.396
  Total number of observations - - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_obs
11508 1117 361
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
26.00 69.00 1.90
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
87.0 99.8 46.2
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
9.5 8.2 4.9
CC(1/2)
_reflns.pdbx_CC_half _reflns_shell.pdbx_CC_half
0.999 1.000 0.627

Refinement
PDB entry ID
_entry.id
6CCD
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2018-02-06
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
51.0 - 1.800 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1689 / 0.2084