Experiment | |
---|---|
Method _exptl.method | X-RAY DIFFRACTION The method used in the experiment. |
Experimental protocol _diffrn_radiation.pdbx_diffrn_protocol | SINGLE WAVELENGTH SINGLE WAVELENGTH, LAUE, or MAD. |
Source type _diffrn_source.source | SYNCHROTRON The general class of the radiation source. |
Source details _diffrn_source.type | SOLEIL BEAMLINE PROXIMA 1 The make, model or name of the source of radiation. |
Synchrotron site _diffrn_source.pdbx_synchrotron_site | SOLEIL Synchrotron site. |
Beamline _diffrn_source.pdbx_synchrotron_beamline | PROXIMA 1 Synchrotron beamline. |
Temperature [K] _diffrn.ambient_temp | 100 The mean temperature in kelvins at which the intensities were |
Detector technology _diffrn_detector.detector | PIXEL The general class of the radiation detector. |
Collection date _diffrn_detector.pdbx_collection_date | 2021-06-13 The date of data collection. |
Detector _diffrn_detector.type | DECTRIS EIGER X 16M The make, model or name of the detector device used. |
Wavelength(s) [Å] _diffrn_source.pdbx_wavelength_list | 0.9840 Comma separated list of wavelengths or wavelength range. |
Software | |
Data processing #1 _software.classification | autoPROC The classification of the program according to its |
Data processing #2 _software.classification | autoPROC (Feb 5, 2021) The classification of the program according to its |
Data processing #3 _software.classification | autoPROC (2.3.63) The classification of the program according to its |
Data reduction _software.classification | autoPROC The classification of the program according to its |
Data scaling _software.classification | autoPROC (0.7.4) The classification of the program according to its |
Phasing _software.classification | MOLREP The classification of the program according to its |
Refinement _software.classification | BUSTER (2.10.4 (21-NOV-2022)) The classification of the program according to its |
General information | |
Spacegroup name _symmetry.space_group_name_H-M | P 21 21 21 Hermann-Mauguin space-group symbol. Note that the |
Unit cell parameters _cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma} | 42.922 Unit-cell length a corresponding to the structure reported in 59.183 Unit-cell length b corresponding to the structure reported in 183.329 Unit-cell length c corresponding to the structure reported in 90.0 Unit-cell angle alpha of the reported structure in degrees. 90.0 Unit-cell angle beta of the reported structure in degrees. 90.0 Unit-cell angle gamma of the reported structure in degrees. |
Wavelength _diffrn_radiation_wavelength.wavelength | 0.98400 ÅThe radiation wavelength in angstroms. |
Diffraction limits _reflns.pdbx_aniso_diffraction_limit_{1,2,3} | Principal axes of ellipsoid fitted to diffraction cut-off surface _reflns.pdbx_aniso_diffraction_limit_axis_{1,2,3}_ortho[1..3] | ||
---|---|---|---|
2.384 ÅAnisotropic diffraction limit along principal axis 1 (of | 1.0000 Principal axis 1 (X component) of ellipsoid fitted to the | 0.0000 Principal axis 1 (Y component) of ellipsoid fitted to the | 0.0000 Principal axis 1 (Z component) of ellipsoid fitted to the |
1.769 ÅAnisotropic diffraction limit along principal axis 2 (of | 0.0000 Principal axis 2 (X component) of ellipsoid fitted to the | 1.0000 Principal axis 2 (Y component) of ellipsoid fitted to the | 0.0000 Principal axis 2 (Z component) of ellipsoid fitted to the |
1.740 ÅAnisotropic diffraction limit along principal axis 3 (of | 0.0000 Principal axis 3 (X component) of ellipsoid fitted to the | 0.0000 Principal axis 3 (Y component) of ellipsoid fitted to the | 1.0000 Principal axis 3 (Z component) of ellipsoid fitted to the |
Data quality metrics | Overall | InnerShell | OuterShell |
---|---|---|---|
Low resolution limit [Å] _reflns.d_resolution_low _reflns_shell.d_res_low | 91.665 The largest value in angstroms for the interplanar spacings | 91.664 The highest value in angstroms for the interplanar spacings | 1.924 The highest value in angstroms for the interplanar spacings |
High resolution limit [Å] _reflns.d_resolution_high _reflns_shell.d_res_high | 1.790 The smallest value in angstroms for the interplanar spacings | 5.633 The smallest value in angstroms for the interplanar spacings | 1.790 The smallest value in angstroms for the interplanar spacings |
Rmerge _reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs | 0.074 The R value for merging intensities satisfying the observed | 0.034 The value of Rmerge(I) for reflections classified as 'observed' | 1.221 The value of Rmerge(I) for reflections classified as 'observed' |
Rmeas _reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all | 0.077 The redundancy-independent merging R factor value Rrim, | 0.036 The redundancy-independent merging R factor value Rrim, | 1.331 The redundancy-independent merging R factor value Rrim, |
Rpim _reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all | 0.022 The precision-indicating merging R factor value Rpim, | 0.011 The precision-indicating merging R factor value Rpim, | 0.508 The precision-indicating merging R factor value Rpim, |
Total number of observations _reflns.pdbx_number_measured_all _reflns_shell.number_measured_all | 406524 Total number of measured reflections. | 18589 The total number of reflections measured for this | 10006 The total number of reflections measured for this |
Total number unique _reflns.number_obs _reflns_shell.number_unique_all | 32306 The number of reflections in the REFLN list (not the DIFFRN_REFLN | 1614 The total number of measured reflections which are symmetry- | 1616 The total number of measured reflections which are symmetry- |
<I/σ(I)> _reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs | 16.28 The mean of the ratio of the intensities to their | 50.07 The ratio of the mean of the intensities of the reflections | 1.21 The ratio of the mean of the intensities of the reflections |
Completeness (spherical) [%] _reflns.pdbx_percent_possible_spherical _reflns_shell.pdbx_percent_possible_spherical | 71.7 Completeness (as a percentage) of symmetry-unique data | 99.9 Completeness (as a percentage) of symmetry-unique data | 18.8 Completeness (as a percentage) of symmetry-unique data |
Completeness (ellipsoidal) [%] _reflns.pdbx_percent_possible_ellipsoidal _reflns_shell.pdbx_percent_possible_ellipsoidal | 91.9 Completeness (as a percentage) of symmetry-unique data | 99.9 Completeness (as a percentage) of symmetry-unique data | 49.2 Completeness (as a percentage) of symmetry-unique data |
Multiplicity _reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy | 12.6 Overall redundancy for this data set. | 11.5 Redundancy for the current shell. | 6.2 Redundancy for the current shell. |
CC(1/2) _reflns.pdbx_CC_half _reflns_shell.pdbx_CC_half | 0.999 The Pearson's correlation coefficient expressed as a decimal value | 0.999 The Pearson's correlation coefficient expressed as a decimal value | 0.527 The Pearson's correlation coefficient expressed as a decimal value |
Anomalous completeness (spherical) _reflns.pdbx_percent_possible_spherical_anomalous _reflns_shell.pdbx_percent_possible_spherical_anomalous | 70.4 Completeness (as a percentage) of symmetry-unique | 100.0 Completeness (as a percentage) of symmetry-unique | 17.4 Completeness (as a percentage) of symmetry-unique |
Anomalous completeness (ellipsoidal) _reflns.pdbx_percent_possible_ellipsoidal_anomalous _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous | 91.8 Completeness (as a percentage) of symmetry-unique | 100.0 Completeness (as a percentage) of symmetry-unique | 48.6 Completeness (as a percentage) of symmetry-unique |
Anomalous multiplicity _reflns.pdbx_redundancy_anomalous _reflns_shell.pdbx_redundancy_anomalous | 6.7 The overall redundancy of anomalous difference data | 6.9 The redundancy of anomalous difference data within the | 3.3 The redundancy of anomalous difference data within the |
CC(ano) _reflns.pdbx_CC_half_anomalous _reflns_shell.pdbx_CC_half_anomalous | -0.375 The overall correlation coefficient between two randomly | -0.618 The correlation coefficient within the spherical shell | -0.102 The correlation coefficient within the spherical shell |
|DANO|/σ(DANO) _reflns.pdbx_absDiff_over_sigma_anomalous _reflns_shell.pdbx_absDiff_over_sigma_anomalous | 0.705 The overall mean ratio of absolute anomalous intensity | 0.636 The mean ratio of absolute anomalous intensity | 0.654 The mean ratio of absolute anomalous intensity |
Refinement | |
---|---|
PDB entry ID _entry.id | 8CB9 |
Deposition date _pdbx_database_status.recvd_initial_deposition_date | 2023-01-25 |
Resolution _refine.ls_d_res_low _refine.ls_d_res_high | 23.6 - 1.790 Å |
Rwork/Rfree _refine.ls_R_factor_R_work _refine.ls_R_factor_R_free | 0.2279 / 0.2712 |
Structure solution method _refine.pdbx_method_to_determine_struct | MOLECULAR REPLACEMENT |
Starting model (for MR) _refine.pdbx_starting_model | 8C6R |