Data quality metrics extracted from 5c8s.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5C8S at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
SSRF BEAMLINE BL17U
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
SSRF
Beamline
_diffrn_source.pdbx_synchrotron_beamline
BL17U
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2014-10-28
Detector
_diffrn_detector.type
DECTRIS PILATUS 6M
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.979
Software
Data processing
_software.classification
HKL-3000
Data reduction
_software.classification
HKL-3000
Refinement
_software.classification
PHENIX (1.7.1_743)
General information
Spacegroup name
_symmetry.space_group_name_H-M
C 2 2 21
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
188.797 196.840 180.100 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97900 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
50.000 50.000 3.360
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
3.300 8.940 3.300
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.076 0.035 0.877
Rmeas
_reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all
0.082 0.038 0.955
Rpim
_reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all
0.032 0.015 0.376
Total number of observations
_reflns.pdbx_number_measured_all
339184 - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_all
50763 2702 2492
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
4.30 - -
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
100.0 99.9 100.0
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
6.7 6.2 6.4
CC(1/2)
_reflns_shell.pdbx_CC_half
- 0.998 0.839

Refinement
PDB entry ID
_entry.id
5C8S
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2015-06-26
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
42.6 - 3.326 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2171 / 0.2594