Data quality metrics extracted from 5c48.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5C48 at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
ROTATING ANODE
Source details
_diffrn_source.type
RIGAKU
Temperature [K]
_diffrn.ambient_temp
113
Detector technology
_diffrn_detector.detector
IMAGE PLATE
Collection date
_diffrn_detector.pdbx_collection_date
2007-10-25
Detector
_diffrn_detector.type
RIGAKU RAXIS IV++
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.5418
Software
Data reduction
_software.classification
CrystalClear (1.3.6 SP2 r1)
Data scaling
_software.classification
d*TREK (9.4SSI)
Phasing
_software.classification
PHASER
Model building
_software.classification
Coot
Refinement
_software.classification
REFMAC (5.8.0103)
General information
Spacegroup name
_symmetry.space_group_name_H-M
C 2 2 21
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
52.58 149.19 79.32 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
1.54180 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
74.600 19.830 1.510
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.460 3.140 1.460
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.041 0.024 0.269
  Rmeas - - -
  Rpim - - -
Total number of observations
_reflns.pdbx_number_measured_all _reflns_shell.number_measured_all
245069 27850 19593
Total number unique
_reflns.number_obs _reflns_shell.number_unique_all
54000 5460 5281
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
16.70 45.20 4.00
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
99.1 95.8 98.0
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
4.5 4.9 3.7
  CC(1/2) - - -

Refinement
PDB entry ID
_entry.id
5C48
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2015-06-17
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
74.6 - 1.460 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1825 / 0.1886
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
1LZ7