Data quality metrics extracted from 5c0c.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5C0C at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
DIAMOND BEAMLINE I03
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
Diamond
Beamline
_diffrn_source.pdbx_synchrotron_beamline
I03
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2012-03-08
Detector
_diffrn_detector.type
DECTRIS PILATUS 6M
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.97630
Software
Data reduction
_software.classification
XDS
Data scaling
_software.classification
SCALA (3.3.20)
Phasing
_software.classification
PHASER (2.1.4)
Refinement
_software.classification
REFMAC (5.8.0073)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
43.92 100.37 122.73 96.90 98.02 96.07
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97630 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
120.384 120.384 2.030
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.970 8.830 1.970
Rmerge
_reflns.pdbx_Rsym_value _reflns_shell.Rmerge_I_obs
0.048 0.041 0.324
Rmeas
_reflns.pdbx_Rrim_I_all
0.060 - -
Rpim
_reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all
0.040 0.025 0.380
Total number of observations
_reflns.pdbx_number_measured_all _reflns_shell.number_measured_all
276077 3230 20111
Total number unique
_reflns.number_obs _reflns_shell.number_unique_all
139923 1559 10178
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
8.30 14.10 2.20
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
97.4 98.0 96.0
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
2.0 2.1 2.0
  CC(1/2) - - -

Refinement
PDB entry ID
_entry.id
5C0C
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2015-06-12
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
120.4 - 1.974 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1885 / 0.2273
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
3UTP and 3UTQ