Data quality metrics extracted from 6byf.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 6BYF at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
APS BEAMLINE 22-ID
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
APS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
22-ID
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2016-12-15
Detector
_diffrn_detector.type
MARMOSAIC 300 mm CCD
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.97177
Software
Data reduction
_software.classification
HKL-2000
Data scaling
_software.classification
HKL-2000
Phasing
_software.classification
AutoSol
Refinement
_software.classification
PHENIX (1.12_2829: ???)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 65 2 2
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
92.968 92.968 814.716 90.0 90.0 120.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97177 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
50.000 2.380
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.340 2.340
  Rmerge - -
Rmeas
_reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all
0.116 0.544
  Rpim - -
  Total number of observations - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_obs
162303 7262
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
15.10 1.50
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
97.9 87.1
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
5.2 3.9
CC(1/2)
_reflns_shell.pdbx_CC_half
- 0.824

Refinement
PDB entry ID
_entry.id
6BYF
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2017-12-20
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
49.5 - 2.350 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2059 / 0.2285
Structure solution method
_refine.pdbx_method_to_determine_struct
SAD