Data quality metrics extracted from 3by5.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 3BY5 at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
APS BEAMLINE 31-ID
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
APS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
31-ID
Temperature [K]
_diffrn.ambient_temp
77.0
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2007-07-19
Detector
_diffrn_detector.type
MAR CCD 165 mm
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.9796
Software
Data collection
_software.classification
MAR345 (CCD)
Data reduction
_software.classification
HKL-2000
Data scaling
_software.classification
HKL-2000
Phasing
_software.classification
SHELXD
Model building
_software.classification
SHELX
Refinement
_software.classification
REFMAC (5.3.0034)
General information
Spacegroup name
_symmetry.space_group_name_H-M
H 3 2
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
72.023 72.023 141.069 90.0 90.0 120.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97960 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
50.000 2.610
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.520 2.520
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.138 0.890
  Rmeas - -
  Rpim - -
  Total number of observations - -
Total number unique
_reflns.number_obs
4985 -
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
3.70 1.20
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
99.6 97.2
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
6.4 5.3
  CC(1/2) - -

Refinement
PDB entry ID
_entry.id
3BY5
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2008-01-15
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
20.0 - 2.520 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2114 / 0.2719
Structure solution method
_refine.pdbx_method_to_determine_struct
SAD