Data quality metrics extracted from 5bpd.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5BPD at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
SLS BEAMLINE X06SA
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
SLS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
X06SA
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2013-09-12
Detector
_diffrn_detector.type
DECTRIS PILATUS 6M
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.0
Software
Data reduction
_software.classification
XDS
Phasing
_software.classification
PHENIX
Model building
_software.classification
Coot
Refinement
_software.classification
PHENIX
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1 21 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
95.791 58.670 143.074 90.00 92.82 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
1.00000 Å

Data quality metricsOverall
Low resolution limit [Å]
_reflns.d_resolution_low
7.130
High resolution limit [Å]
_reflns.d_resolution_high
2.400
Rmerge
_reflns.pdbx_Rmerge_I_obs
0.138
  Rmeas -
  Rpim -
  Total number of observations -
Total number unique
_reflns.number_obs
62275
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
8.23
Completeness [%]
_reflns.percent_possible_obs
99.2
Multiplicity
_reflns.pdbx_redundancy
6.5
  CC(1/2) -

Refinement
PDB entry ID
_entry.id
5BPD
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2015-05-28
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
7.1 - 2.400 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2336 / 0.2828
Structure solution method
_refine.pdbx_method_to_determine_struct
SAD