Experiment | |
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Method _exptl.method | X-RAY DIFFRACTION The method used in the experiment. |
Experimental protocol _diffrn_radiation.pdbx_diffrn_protocol | MAD SINGLE WAVELENGTH, LAUE, or MAD. |
Source type _diffrn_source.source | SYNCHROTRON The general class of the radiation source. |
Source details _diffrn_source.type | APS BEAMLINE 23-ID-D The make, model or name of the source of radiation. |
Synchrotron site _diffrn_source.pdbx_synchrotron_site | APS Synchrotron site. |
Beamline _diffrn_source.pdbx_synchrotron_beamline | 23-ID-D Synchrotron beamline. |
Temperature [K] _diffrn.ambient_temp | 100 The mean temperature in kelvins at which the intensities were |
Detector technology _diffrn_detector.detector | CCD The general class of the radiation detector. |
Collection date _diffrn_detector.pdbx_collection_date | 2007-10-26 The date of data collection. |
Detector _diffrn_detector.type | MARMOSAIC 300 mm CCD The make, model or name of the detector device used. |
Wavelength(s) [Å] _diffrn_source.pdbx_wavelength_list | 0.91840, 0.97953, 0.97939 Comma separated list of wavelengths or wavelength range. |
Software | |
Data collection _software.classification | MAR345 (CCD) The classification of the program according to its |
Data reduction _software.classification | XDS The classification of the program according to its |
Data scaling _software.classification | XSCALE (Wolfgang Kabsch) The classification of the program according to its |
Phasing #1 _software.classification | SHELX (George Sheldrick; gsheldr@shelx.uni-ac.gwdg.de) The classification of the program according to its |
Phasing #2 _software.classification | autoSHARP The classification of the program according to its |
Model building _software.classification | MolProbity (3beta29; D.C. & J.S. Richardson lab; molprobity@kinemage.biochem.duke.edu) The classification of the program according to its |
Refinement #1 _software.classification | REFMAC (5.2.0019; Murshudov, G.N.; ccp4@dl.ac.uk) The classification of the program according to its |
Refinement #2 _software.classification | PHENIX (P.D. Adams; PDAdams@lbl.gov) The classification of the program according to its |
General information | |
Spacegroup name _symmetry.space_group_name_H-M | P 21 21 21 Hermann-Mauguin space-group symbol. Note that the |
Unit cell parameters _cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma} | 35.655 Unit-cell length a corresponding to the structure reported in 93.302 Unit-cell length b corresponding to the structure reported in 104.095 Unit-cell length c corresponding to the structure reported in 90.0 Unit-cell angle alpha of the reported structure in degrees. 90.0 Unit-cell angle beta of the reported structure in degrees. 90.0 Unit-cell angle gamma of the reported structure in degrees. |
Wavelength _diffrn_radiation_wavelength.wavelength | 0.91840 The radiation wavelength in angstroms. 0.97953 The radiation wavelength in angstroms. 0.97939 ÅThe radiation wavelength in angstroms. |
Data quality metrics | Overall | InnerShell | OuterShell |
---|---|---|---|
Low resolution limit [Å] _reflns.d_resolution_low _reflns_shell.d_res_low | 42.563 The largest value in angstroms for the interplanar spacings | 42.563 The highest value in angstroms for the interplanar spacings | 1.720 The highest value in angstroms for the interplanar spacings |
High resolution limit [Å] _reflns.d_resolution_high _reflns_shell.d_res_high | 1.660 The smallest value in angstroms for the interplanar spacings | 3.570 The smallest value in angstroms for the interplanar spacings | 1.660 The smallest value in angstroms for the interplanar spacings |
Rmerge _reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs | 0.069 The R value for merging intensities satisfying the observed | 0.041 The value of Rmerge(I) for reflections classified as 'observed' | 0.539 The value of Rmerge(I) for reflections classified as 'observed' |
Rmeas | - | - | - |
Rpim | - | - | - |
Total number of observations _reflns_shell.number_measured_obs | - | 14887 The number of reflections classified as 'observed' | 14801 The number of reflections classified as 'observed' |
Total number unique _reflns.number_obs _reflns_shell.number_unique_obs | 41954 The number of reflections in the REFLN list (not the DIFFRN_REFLN | 4454 The total number of measured reflections classified as 'observed' | 4173 The total number of measured reflections classified as 'observed' |
<I/σ(I)> _reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs | 10.16 The mean of the ratio of the intensities to their | 22.60 The ratio of the mean of the intensities of the reflections | 2.40 The ratio of the mean of the intensities of the reflections |
Completeness [%] _reflns.percent_possible_obs _reflns_shell.percent_possible_all | 99.7 The percentage of geometrically possible reflections represented | 99.1 The percentage of geometrically possible reflections represented | 99.7 The percentage of geometrically possible reflections represented |
Multiplicity | - | - | - |
CC(1/2) | - | - | - |
Refinement | |
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PDB entry ID _entry.id | 3BDV |
Deposition date _pdbx_database_status.recvd_initial_deposition_date | 2007-11-15 |
Resolution _refine.ls_d_res_low _refine.ls_d_res_high | 42.6 - 1.660 Å |
Rwork/Rfree _refine.ls_R_factor_R_work _refine.ls_R_factor_R_free | 0.1700 / 0.2130 |
Structure solution method _refine.pdbx_method_to_determine_struct | MAD |