Data quality metrics extracted from 2bdy.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 2BDY at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
ROTATING ANODE
Source details
_diffrn_source.type
RIGAKU RU300
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
IMAGE PLATE
Collection date
_diffrn_detector.pdbx_collection_date
2004-06-07
Detector
_diffrn_detector.type
MARRESEARCH
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.54179
Software
Data reduction
_software.classification
MOSFLM
Data scaling #1
_software.classification
SCALA (Phil Evans; pre@mrc-lmb.cam.ac.uk)
Data scaling #2
_software.classification
CCP4 (SCALA)
Refinement
_software.classification
REFMAC (Murshudov, G.N.; ccp4@dl.ac.uk)
General information
Spacegroup name
_symmetry.space_group_name_H-M
C 1 2 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
69.918 71.649 71.234 90.00 99.56 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
1.54179 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
70.710 1.700
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.610 1.610
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.132 0.355
  Rmeas - -
  Rpim - -
Total number of observations
_reflns_shell.number_measured_obs
- 5940
Total number unique
_reflns.number_obs
43774 -
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
3.40 2.10
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
97.9 91.9
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
3.7 3.6
  CC(1/2) - -

Refinement
PDB entry ID
_entry.id
2BDY
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2005-10-21
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
70.7 - 1.610 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1930 / 0.2250
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
WARNING: no starting model (for MR) given