Experiment | |
---|---|
Method _exptl.method | X-RAY DIFFRACTION The method used in the experiment. |
Experimental protocol _diffrn_radiation.pdbx_diffrn_protocol | SINGLE WAVELENGTH SINGLE WAVELENGTH, LAUE, or MAD. |
Source type _diffrn_source.source | SYNCHROTRON The general class of the radiation source. |
Source details _diffrn_source.type | SLS BEAMLINE X06SA The make, model or name of the source of radiation. |
Synchrotron site _diffrn_source.pdbx_synchrotron_site | SLS Synchrotron site. |
Beamline _diffrn_source.pdbx_synchrotron_beamline | X06SA Synchrotron beamline. |
Temperature [K] _diffrn.ambient_temp | 100 The mean temperature in kelvins at which the intensities were |
Detector technology _diffrn_detector.detector | PIXEL The general class of the radiation detector. |
Collection date _diffrn_detector.pdbx_collection_date | 2020-03-20 The date of data collection. |
Detector _diffrn_detector.type | DECTRIS EIGER X 16M The make, model or name of the detector device used. |
Wavelength(s) [Å] _diffrn_source.pdbx_wavelength_list | 1.000009 Comma separated list of wavelengths or wavelength range. |
Software | |
Data processing #1 _software.classification | autoPROC (1.0.5 20210420) The classification of the program according to its |
Data processing #2 _software.classification | TRUNCATE (7.1.015) The classification of the program according to its |
Data reduction _software.classification | XDS (Feb 5, 2021) The classification of the program according to its |
Data scaling _software.classification | Aimless (0.7.7) The classification of the program according to its |
Phasing _software.classification | PHASER The classification of the program according to its |
Refinement #1 _software.classification | BUSTER (2.10.4) The classification of the program according to its |
Refinement #2 _software.classification | PHENIX (1.17.1_3660) The classification of the program according to its |
General information | |
Spacegroup name _symmetry.space_group_name_H-M | C 1 2 1 Hermann-Mauguin space-group symbol. Note that the |
Unit cell parameters _cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma} | 61.948 Unit-cell length a corresponding to the structure reported in 90.589 Unit-cell length b corresponding to the structure reported in 48.130 Unit-cell length c corresponding to the structure reported in 90.00 Unit-cell angle alpha of the reported structure in degrees. 93.92 Unit-cell angle beta of the reported structure in degrees. 90.00 Unit-cell angle gamma of the reported structure in degrees. |
Wavelength _diffrn_radiation_wavelength.wavelength | 1.00001 ÅThe radiation wavelength in angstroms. |
Data quality metrics | Overall | InnerShell | OuterShell |
---|---|---|---|
Low resolution limit [Å] _reflns.d_resolution_low _reflns_shell.d_res_low | 51.054 The largest value in angstroms for the interplanar spacings | 51.054 The highest value in angstroms for the interplanar spacings | 1.558 The highest value in angstroms for the interplanar spacings |
High resolution limit [Å] _reflns.d_resolution_high _reflns_shell.d_res_high | 1.531 The smallest value in angstroms for the interplanar spacings | 4.156 The smallest value in angstroms for the interplanar spacings | 1.531 The smallest value in angstroms for the interplanar spacings |
Rmerge _reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs | 0.028 The R value for merging intensities satisfying the observed | 0.021 The value of Rmerge(I) for reflections classified as 'observed' | 0.259 The value of Rmerge(I) for reflections classified as 'observed' |
Rmeas _reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all | 0.034 The redundancy-independent merging R factor value Rrim, | 0.025 The redundancy-independent merging R factor value Rrim, | 0.306 The redundancy-independent merging R factor value Rrim, |
Rpim _reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all | 0.018 The precision-indicating merging R factor value Rpim, | 0.013 The precision-indicating merging R factor value Rpim, | 0.162 The precision-indicating merging R factor value Rpim, |
Total number of observations _reflns.pdbx_number_measured_all _reflns_shell.number_measured_all | 124804 Total number of measured reflections. | 6176 The total number of reflections measured for this | 6376 The total number of reflections measured for this |
Total number unique _reflns.number_obs _reflns_shell.number_unique_all | 38404 The number of reflections in the REFLN list (not the DIFFRN_REFLN | 1960 The total number of measured reflections which are symmetry- | 1870 The total number of measured reflections which are symmetry- |
<I/σ(I)> _reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs | 19.58 The mean of the ratio of the intensities to their | 40.35 The ratio of the mean of the intensities of the reflections | 4.47 The ratio of the mean of the intensities of the reflections |
Completeness [%] _reflns.percent_possible_obs _reflns_shell.percent_possible_all | 96.5 The percentage of geometrically possible reflections represented | 96.2 The percentage of geometrically possible reflections represented | 93.5 The percentage of geometrically possible reflections represented |
Multiplicity _reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy | 3.2 Overall redundancy for this data set. | 3.1 Redundancy for the current shell. | 3.4 Redundancy for the current shell. |
CC(1/2) _reflns.pdbx_CC_half _reflns_shell.pdbx_CC_half | 0.999 The Pearson's correlation coefficient expressed as a decimal value | 0.999 The Pearson's correlation coefficient expressed as a decimal value | 0.951 The Pearson's correlation coefficient expressed as a decimal value |
Anomalous completeness _reflns.pdbx_percent_possible_anomalous _reflns_shell.pdbx_percent_possible_anomalous | 84.3 Completeness (as a percentage) of symmetry-unique | 90.8 Completeness (as a percentage) of symmetry-unique | 78.3 Completeness (as a percentage) of symmetry-unique |
Anomalous multiplicity _reflns.pdbx_redundancy_anomalous _reflns_shell.pdbx_redundancy_anomalous | 1.7 The overall redundancy of anomalous difference data | 1.7 The redundancy of anomalous difference data within the | 1.8 The redundancy of anomalous difference data within the |
CC(ano) _reflns.pdbx_CC_half_anomalous _reflns_shell.pdbx_CC_half_anomalous | -0.221 The overall correlation coefficient between two randomly | -0.249 The correlation coefficient within the spherical shell | 0.115 The correlation coefficient within the spherical shell |
|DANO|/σ(DANO) _reflns.pdbx_absDiff_over_sigma_anomalous _reflns_shell.pdbx_absDiff_over_sigma_anomalous | 0.657 The overall mean ratio of absolute anomalous intensity | 0.573 The mean ratio of absolute anomalous intensity | 0.576 The mean ratio of absolute anomalous intensity |
Refinement | |
---|---|
PDB entry ID _entry.id | 8B3X |
Deposition date _pdbx_database_status.recvd_initial_deposition_date | 2022-09-17 |
Resolution _refine.ls_d_res_low _refine.ls_d_res_high | 51.0 - 1.531 Å |
Rwork/Rfree _refine.ls_R_factor_R_work _refine.ls_R_factor_R_free | 0.1893 / 0.2074 |
Structure solution method _refine.pdbx_method_to_determine_struct | MOLECULAR REPLACEMENT |
Starting model (for MR) _refine.pdbx_starting_model | 4LD8 |