Data quality metrics extracted from 4b3d.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 4B3D at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
ESRF BEAMLINE ID14-4
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
ESRF
Beamline
_diffrn_source.pdbx_synchrotron_beamline
ID14-4
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2010-03-15
Detector
_diffrn_detector.type
ADSC QUANTUM 210
Software
Data reduction
_software.classification
XDS
Data scaling
_software.classification
XDS
Phasing
_software.classification
AMoRE
Refinement
_software.classification
PHENIX (PHENIX.REFINE)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1 21 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
40.280 87.246 62.628 90.0 91.5 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97650 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
43.620 1.690
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.590 1.590
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.060 0.610
  Rmeas - -
  Rpim - -
  Total number of observations - -
Total number unique
_reflns.number_obs
57763 -
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
13.76 2.19
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
99.2 96.5
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
3.7 3.6
  CC(1/2) - -

Refinement
PDB entry ID
_entry.id
4B3D
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2012-07-23
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
40.3 - 1.589 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1786 / 0.2120
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
PDB ENTRY 1PZN CHAIN Å