Data quality metrics extracted from 6ap4.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 6AP4 at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
AUSTRALIAN SYNCHROTRON BEAMLINE MX2
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
Australian Synchrotron
Beamline
_diffrn_source.pdbx_synchrotron_beamline
MX2
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2013-09-27
Detector
_diffrn_detector.type
ADSC QUANTUM 315r
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.71073
Software
Data processing
_software.classification
HKL-2000
Data reduction
_software.classification
DENZO
Data scaling
_software.classification
SCALEPACK
Phasing
_software.classification
PHASER
Refinement
_software.classification
REFMAC (5.8.0158)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1 21 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
72.713 328.597 147.497 90.00 91.53 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
0.71073 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
164.300 50.000 3.060
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.950 6.350 2.950
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.115 0.047 0.602
Rmeas
_reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all
0.130 0.053 0.681
Rpim
_reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all
0.059 0.024 0.315
Total number of observations
_reflns.pdbx_number_measured_all
670605 - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_obs
144290 14482 14388
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
8.40 - -
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
99.8 99.3 99.9
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
4.6 4.6 4.6
CC(1/2)
_reflns_shell.pdbx_CC_half
- 0.995 0.786

Refinement
PDB entry ID
_entry.id
6AP4
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2017-08-16
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
164.3 - 2.950 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2484 / 0.2867
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
4K3S