Data quality metrics extracted from 7agp.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 7AGP at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
ESRF BEAMLINE ID23-1
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
ESRF
Beamline
_diffrn_source.pdbx_synchrotron_beamline
ID23-1
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2011-09-30
Detector
_diffrn_detector.type
ADSC QUANTUM 315
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.97630
Software
Data reduction
_software.classification
XDS
Data scaling
_software.classification
XDS (Jan 31, 2020)
Phasing
_software.classification
PHASER
Refinement #1
_software.classification
BUSTER (2.10.3)
Refinement #2
_software.classification
REFMAC (5.8.0258)
General information
Spacegroup name
_symmetry.space_group_name_H-M
C 2 2 21
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
146.028 157.140 114.255 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97630 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
49.300 2.540
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.400 2.400
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.042 0.845
Rmeas
_reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all
0.050 0.998
  Rpim - -
  Total number of observations - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_obs
51153 8121
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
15.77 1.43
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
99.1 98.4
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
3.5 3.5
CC(1/2)
_reflns.pdbx_CC_half _reflns_shell.pdbx_CC_half
0.999 0.658

Refinement
PDB entry ID
_entry.id
7AGP
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2020-09-23
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
49.3 - 2.400 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1966 / 0.2193
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
3TZW