Data quality metrics extracted from 5agv.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5AGV at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
BESSY BEAMLINE 14.1
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
BESSY
Beamline
_diffrn_source.pdbx_synchrotron_beamline
14.1
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2014-09-24
Detector
_diffrn_detector.type
DECTRIS PILATUS 6M
Software
Data reduction
_software.classification
XDS
Data scaling
_software.classification
Aimless
Phasing
_software.classification
PHASER (via)
Refinement
_software.classification
PHENIX (PHENIX.REFINE)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1 21 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
72.869 89.764 81.928 90.00 95.14 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
0.91844 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
40.800 1.940
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.930 1.930
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.100 0.820
  Rmeas - -
  Rpim - -
  Total number of observations - -
Total number unique
_reflns.number_obs
79001 -
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
13.70 2.20
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
100.0 99.9
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
6.8 6.6
  CC(1/2) - -

Refinement
PDB entry ID
_entry.id
5AGV
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2015-02-03
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
40.8 - 1.930 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1688 / 0.2095
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
WWPDB ENTRY 3P16