Data quality metrics extracted from 5afy.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5AFY at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
BESSY BEAMLINE 14.2
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
BESSY
Beamline
_diffrn_source.pdbx_synchrotron_beamline
14.2
Temperature [K]
_diffrn.ambient_temp
113
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2013-07-18
Detector
_diffrn_detector.type
MARMOSAIC 225 mm CCD
Software
Data reduction
_software.classification
HKL-2000
Data scaling
_software.classification
HKL-2000
Phasing
_software.classification
PHASER
Refinement
_software.classification
PHENIX (PHENIX.REFINE)
General information
Spacegroup name
_symmetry.space_group_name_H-M
C 1 2 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
70.373 71.500 72.636 90.00 100.53 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
0.91841 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
18.450 1.160
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.120 1.120
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.040 0.400
  Rmeas - -
  Rpim - -
  Total number of observations - -
Total number unique
_reflns.number_obs
134540 -
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
25.70 2.50
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
99.3 98.5
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
3.1 2.8
  CC(1/2) - -

Refinement
PDB entry ID
_entry.id
5AFY
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2015-01-27
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
18.4 - 1.120 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1220 / 0.1382
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
PDB ENTRY 4UE7