Data quality metrics extracted from 5afb.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5AFB at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
DIAMOND BEAMLINE I04
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
Diamond
Beamline
_diffrn_source.pdbx_synchrotron_beamline
I04
Temperature [K]
_diffrn.ambient_temp
291.0
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2014-08-13
Detector
_diffrn_detector.type
DECTRIS PILATUS 6M
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.07114, 1.0716
Software
Data reduction
_software.classification
xia2
Data scaling
_software.classification
xia2
Phasing
_software.classification
autoSHARP
Refinement
_software.classification
BUSTER (2.10.2)
General information
Spacegroup name
_symmetry.space_group_name_H-M
I 2 2 2
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
78.43 96.65 101.64 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
1.071141.07160 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
62.090 2.270
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.160 2.160
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.100 0.860
  Rmeas - -
  Rpim - -
  Total number of observations - -
Total number unique
_reflns.number_obs
39860 -
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
10.20 1.70
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
99.7 98.9
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
3.5 3.5
  CC(1/2) - -

Refinement
PDB entry ID
_entry.id
5AFB
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2015-01-21
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
22.9 - 2.160 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2044 / 0.2452
Structure solution method
_refine.pdbx_method_to_determine_struct
SIR
Starting model
_refine.pdbx_starting_model
NONE