Experiment | |
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Method _exptl.method | X-RAY DIFFRACTION The method used in the experiment. |
Experimental protocol _diffrn_radiation.pdbx_diffrn_protocol | SINGLE WAVELENGTH SINGLE WAVELENGTH, LAUE, or MAD. |
Source type _diffrn_source.source | SYNCHROTRON The general class of the radiation source. |
Source details _diffrn_source.type | ESRF BEAMLINE ID23-2 The make, model or name of the source of radiation. |
Synchrotron site _diffrn_source.pdbx_synchrotron_site | ESRF Synchrotron site. |
Beamline _diffrn_source.pdbx_synchrotron_beamline | ID23-2 Synchrotron beamline. |
Temperature [K] _diffrn.ambient_temp | 100 The mean temperature in kelvins at which the intensities were |
Detector technology _diffrn_detector.detector | PIXEL The general class of the radiation detector. |
Collection date _diffrn_detector.pdbx_collection_date | 2022-01-28 The date of data collection. |
Detector _diffrn_detector.type | DECTRIS PILATUS 2M The make, model or name of the detector device used. |
Wavelength(s) [Å] _diffrn_source.pdbx_wavelength_list | 0.87313 Comma separated list of wavelengths or wavelength range. |
Software | |
Data processing #1 _software.classification | autoPROC (1.0.5 20220608) The classification of the program according to its |
Data processing #2 _software.classification | TRUNCATE (7.1.011) The classification of the program according to its |
Data reduction _software.classification | XDS (Jan 10, 2022) The classification of the program according to its |
Data scaling _software.classification | Aimless (0.7.4) The classification of the program according to its |
Phasing _software.classification | PHENIX (1.19.2-4158) The classification of the program according to its |
Refinement #1 _software.classification | BUSTER (2.10.4 (8-JUN-2022)) The classification of the program according to its |
Refinement #2 _software.classification | BUSTER (2.10.4 (8-JUN-2022)) The classification of the program according to its |
General information | |
Spacegroup name _symmetry.space_group_name_H-M | P 1 21 1 Hermann-Mauguin space-group symbol. Note that the |
Unit cell parameters _cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma} | 70.369 Unit-cell length a corresponding to the structure reported in 111.504 Unit-cell length b corresponding to the structure reported in 101.793 Unit-cell length c corresponding to the structure reported in 90.00 Unit-cell angle alpha of the reported structure in degrees. 99.78 Unit-cell angle beta of the reported structure in degrees. 90.00 Unit-cell angle gamma of the reported structure in degrees. |
Wavelength _diffrn_radiation_wavelength.wavelength | 0.87313 ÅThe radiation wavelength in angstroms. |
Data quality metrics | Overall | InnerShell | OuterShell |
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Low resolution limit [Å] _reflns.d_resolution_low _reflns_shell.d_res_low | 100.314 The largest value in angstroms for the interplanar spacings | 100.314 The highest value in angstroms for the interplanar spacings | 2.661 The highest value in angstroms for the interplanar spacings |
High resolution limit [Å] _reflns.d_resolution_high _reflns_shell.d_res_high | 2.616 The smallest value in angstroms for the interplanar spacings | 7.100 The smallest value in angstroms for the interplanar spacings | 2.616 The smallest value in angstroms for the interplanar spacings |
Rmerge _reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs | 0.195 The R value for merging intensities satisfying the observed | 0.081 The value of Rmerge(I) for reflections classified as 'observed' | 0.754 The value of Rmerge(I) for reflections classified as 'observed' |
Rmeas _reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all | 0.222 The redundancy-independent merging R factor value Rrim, | 0.093 The redundancy-independent merging R factor value Rrim, | 0.853 The redundancy-independent merging R factor value Rrim, |
Rpim _reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all | 0.105 The precision-indicating merging R factor value Rpim, | 0.045 The precision-indicating merging R factor value Rpim, | 0.391 The precision-indicating merging R factor value Rpim, |
Total number of observations _reflns.pdbx_number_measured_all _reflns_shell.number_measured_all | 200506 Total number of measured reflections. | 9368 The total number of reflections measured for this | 10675 The total number of reflections measured for this |
Total number unique _reflns.number_obs _reflns_shell.number_unique_all | 46537 The number of reflections in the REFLN list (not the DIFFRN_REFLN | 2324 The total number of measured reflections which are symmetry- | 2342 The total number of measured reflections which are symmetry- |
<I/σ(I)> _reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs | 5.62 The mean of the ratio of the intensities to their | 11.29 The ratio of the mean of the intensities of the reflections | 1.99 The ratio of the mean of the intensities of the reflections |
Completeness [%] _reflns.percent_possible_obs _reflns_shell.percent_possible_all | 99.3 The percentage of geometrically possible reflections represented | 96.1 The percentage of geometrically possible reflections represented | 100.0 The percentage of geometrically possible reflections represented |
Multiplicity _reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy | 4.3 Overall redundancy for this data set. | 4.0 Redundancy for the current shell. | 4.6 Redundancy for the current shell. |
CC(1/2) _reflns.pdbx_CC_half _reflns_shell.pdbx_CC_half | 0.983 The Pearson's correlation coefficient expressed as a decimal value | 0.991 The Pearson's correlation coefficient expressed as a decimal value | 0.726 The Pearson's correlation coefficient expressed as a decimal value |
Anomalous completeness _reflns.pdbx_percent_possible_anomalous _reflns_shell.pdbx_percent_possible_anomalous | 95.8 Completeness (as a percentage) of symmetry-unique | 94.0 Completeness (as a percentage) of symmetry-unique | 98.0 Completeness (as a percentage) of symmetry-unique |
Anomalous multiplicity _reflns.pdbx_redundancy_anomalous _reflns_shell.pdbx_redundancy_anomalous | 2.2 The overall redundancy of anomalous difference data | 2.1 The redundancy of anomalous difference data within the | 2.3 The redundancy of anomalous difference data within the |
CC(ano) _reflns.pdbx_CC_half_anomalous _reflns_shell.pdbx_CC_half_anomalous | -0.127 The overall correlation coefficient between two randomly | -0.371 The correlation coefficient within the spherical shell | -0.030 The correlation coefficient within the spherical shell |
|DANO|/σ(DANO) _reflns.pdbx_absDiff_over_sigma_anomalous _reflns_shell.pdbx_absDiff_over_sigma_anomalous | 0.745 The overall mean ratio of absolute anomalous intensity | 0.584 The mean ratio of absolute anomalous intensity | 0.731 The mean ratio of absolute anomalous intensity |
Refinement | |
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PDB entry ID _entry.id | 8AB3 |
Deposition date _pdbx_database_status.recvd_initial_deposition_date | 2022-07-04 |
Resolution _refine.ls_d_res_low _refine.ls_d_res_high | 100.3 - 2.616 Å |
Rwork/Rfree _refine.ls_R_factor_R_work _refine.ls_R_factor_R_free | 0.1862 / 0.2318 |
Structure solution method _refine.pdbx_method_to_determine_struct | MOLECULAR REPLACEMENT |
Starting model (for MR) _refine.pdbx_starting_model | 4ojn |