Data quality metrics extracted from 3a5d.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 3A5D at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
SPRING-8 BEAMLINE BL41XU
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
SPring-8
Beamline
_diffrn_source.pdbx_synchrotron_beamline
BL41XU
Temperature [K]
_diffrn.ambient_temp
100
Collection date
_diffrn_detector.pdbx_collection_date
2007-10-12
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.0000
Software
Data reduction
_software.classification
HKL-2000
Data scaling
_software.classification
HKL-2000
Phasing
_software.classification
SOLVE
Refinement
_software.classification
CNS (1.2)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 3 2 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
380.701 380.701 147.971 90.0 90.0 120.0
Wavelength
_diffrn_radiation_wavelength.wavelength
1.00000 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
50.000 4.970
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
4.800 4.800
Rmerge
_reflns.pdbx_Rsym_value _reflns_shell.pdbx_Rsym_value
0.068 0.375
  Rmeas - -
  Rpim - -
  Total number of observations - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_all
57305 5364
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
13.40 2.10
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
95.2 89.8
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
5.2 2.6
  CC(1/2) - -

Refinement
PDB entry ID
_entry.id
3A5D
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2009-08-06
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
30.0 - 4.800 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.4410 / 0.4540
Structure solution method
_refine.pdbx_method_to_determine_struct
Combination of MR and MIR
Starting model
_refine.pdbx_starting_model
PDB ENTRY 2HLD