• VIEW the color-coded reciprocal lattice.
  • VIEW the complete job log (probably only useful for diagnosing a failed job).
  • Anisotropy information extracted from the STARANISO log file for 1WYY:
  • Processing software:          DENZO(integration)  SCALEPACK(scaling)
    
    Using MTZ column labels:      FP  SIGFP
    
    NOTE: Not doing Bayesian estimation because corrected Is or Fs were input.
    
    Unit cell and space group:       41.983   41.983  320.544  90.00  90.00 120.00   'H 3'
    Nominal diffraction range:      106.848  2.211
    Input reflection count:           10552
    Unique reflection count:           9636
    
    Diffraction cut-off criterion: Local mean I/sd(I) = 1.20
    
    Diffraction limits & principal axes of ellipsoid fitted to diffraction cut-off surface:
    
                                  2.104         1.0000   0.0000   0.0000       0.894 a* - 0.447 b*
                                  2.104         0.0000   1.0000   0.0000       b*
                                  2.177         0.0000   0.0000   1.0000       c*
    
    GoF to ellipsoid (d*):  0.0267    Fraction of surface points fitted:  100.0%  (     2797 /     2797)
    
    Number of unobserved reflections inside ellipsoid:       10
    Number of observed reflections inside ellipsoid:       9626
    Number of observed reflections outside ellipsoid:         0
    
    Lowest cut-off diffraction limit:
                2.581 at reflection    2    1 -122  in direction   0.016 a* + 0.008 b* - c*
    
    Worst diffraction limit after cut-off:
                2.552 at reflection    7    7   66  in direction   0.105 a* + 0.105 b* + 0.989 c*
    
    Best diffraction limit after cut-off:
                2.211 at reflection    0    6 -135  in direction   0.044 b* - 0.999 c*
    
    NOTE that because the cut-off surface is likely to be only very approximately ellipsoidal, in part
    due to variations in reflection redundancy arising from the chosen collection strategy, the
    directions of the worst and best diffraction limits may not correspond with the reciprocal axes,
    even in high-symmetry space groups (the only constraint being that the surface must have point
    symmetry at least that of the Laue class).
    
    Fraction of data inside cut-off surface:                           99.9%  (     9626 /     9636)
    
    Fraction of surface truncated by detector edges:                   98.6%  (      871 /      883)
    
    WARNING: Diffraction of the input data has probably been truncated due to an inappropriate
    (an)isotropic diffraction cut-off applied in previous processing, or the diffraction pattern may
    have extended beyond the edges of the detector.  In the latter case consider the possibilities of
    either moving the detector closer or swinging it out, having carefully checked in the former case
    that this will not create a risk of spot overlap.
    
    Fraction of total surface above threshold truncated by cusp(s):     0.9%  (        8 /      896)
    
    Scale:                       2.23635E-02    [ = factor to place Iobs on same scale as Iprofile/100.]
    Beq:                               37.47    [ = equivalent overall isotropic B factor on Fs.]
    
                                       B11      B22      B33      B23      B31      B12
    Baniso tensor:                   37.63    37.63    37.14     0.00     0.00     0.00
    
    NOTE: The Baniso tensor is the overall anisotropy tensor on Fs.
    
    Eigenvalues of overall anisotropy tensor (Ang.^2), eigenvalues after subtraction of smallest
    eigenvalue (as used in the anisotropy correction) and corresponding eigenvectors of the overall &
    anisotropy tensor as direction cosines relative to the orthonormal basis (standard PDB convention),
    and also in terms of reciprocal unit-cell vectors:
    
      Eigenvalue #1:           37.63     0.49   ( 1.0000,  0.0000,  0.0000)    0.894 a* - 0.447 b*
      Eigenvalue #2:           37.63     0.49   ( 0.0000,  1.0000,  0.0000)    b*
      Eigenvalue #3:           37.14     0.00   ( 0.0000,  0.0000,  1.0000)    c*
    
    The eigenvalues and eigenvectors of the overall B tensor are the squares of the lengths and the
    directions of the principal axes of the ellipsoid that represents the tensor.
    
    Angle & axis of rotation of diffraction-limit ellipsoid relative to anisotropy tensor:
    
                                   0.00         0.0000   0.0000   1.0000
    
    Anisotropy ratio:             0.013    [ = (Emax - Emin) / Beq ]
    Fractional anisotropy:        0.007    [ = sqrt(1.5 Sum_i (E_i - Beq)^2 / Sum_i E_i^2) ]
    
    Eigenvalues & eigenvectors of mean I/sd(I) anisotropy tensor:
    
                                   1.77         1.0000   0.0000   0.0000       0.894 a* - 0.447 b*
                                   1.77         0.0000   1.0000   0.0000       b*
                                   1.45         0.0000   0.0000   1.0000       c*
    
    Eigenvalues & eigenvectors of weighted CC_1/2 anisotropy tensor:
    
                                  0.287         1.0000   0.0000   0.0000       0.894 a* - 0.447 b*
                                  0.287         0.0000   1.0000   0.0000       b*
                                  0.251         0.0000   0.0000   1.0000       c*
    
    Eigenvalues & eigenvectors of mean K-L divergence anisotropy tensor:
    
                                  0.738         1.0000   0.0000   0.0000       0.894 a* - 0.447 b*
                                  0.738         0.0000   1.0000   0.0000       b*
                                  0.673         0.0000   0.0000   1.0000       c*
    
    Eigenvalues & eigenvectors of mean I/E[I] anisotropy tensor:
    
                                 3.68E-01         1.0000   0.0000   0.0000       0.894 a* - 0.447 b*
                                 3.68E-01         0.0000   1.0000   0.0000       b*
                                 3.31E-01         0.0000   0.0000   1.0000       c*
    
    Ranges of local mean I/sd(I), local weighted CC_1/2, local mean K-L divergence, local mean I/E[I] and D-W factor [= exp(-4 pi^2 s~Us)]:
    
                      ISmean  CChalf  KLdive  IEmean  DWfact
      0   Grey                     Unobservable*
      1   Blue                      Observable*
      2   Red|Pink:9    1.20  0.3000   1.847   0.847  0.0552
      3   Orange        4.07  0.8313   2.679   1.006  0.1238
      4   Yellow        7.28  0.8840   3.475   1.108  0.2436
      5   Green        11.81  0.9195   4.068   1.225  0.4200
      6   Cyan         14.77  0.9315   4.520   1.361  0.6345
      7   Magenta      15.80  0.9410   4.904   1.487  0.8400
      8   White        16.18  0.9446   4.977   1.538  0.9745
    
    * Refer to GLOSSARY for explanation of terminology.
    
    The cut-off surface uses a different color scheme:
    Unmeasured points are blue (inside the fitted surface) or cyan (outside).
    Unobserved points are red (in) or green (out).
    Observed points are orange (in) or white (out).
    The fitted surface is magenta.
    
    Anisotropic S/N ratio:         0.07    [ = max_h | exp(4 pi^2 s~_h delta(B) s_h) - 1 | <I_h/sd(I_h)> ]
    
    The 'anisotropic S/N ratio', unlike the 'anisotropy ratio' or the 'fractional' anisotropy shown
    above, in addition to the anisotropy of the B tensor, takes both the diffraction and the local mean
    I/sd(I) into account.
    
    Estimated twin fraction from K-L divergence of observed acentric Z probability (before, after):  0.00  0.00
    
    Estimated twin fraction from Britton histogram for k,h,-l operator (strong, all):                0.48  0.48
    
    Estimated twin fraction from Murray-Rust plot for k,h,-l operator (strong, all):                 0.04  0.23
    
    Estimated twin fraction from weighted Fisher & Sweet plot for k,h,-l operator:                   0.47
    
    Estimated twin fraction from K-L divergence of |delta-Z| probability for k,h,-l operator:        0.44
    
    Estimated twin fraction from K-L divergence of |H| probability for k,h,-l operator:              0.45
    
    Estimated twin fraction from Britton histogram for -h,-k,l operator (strong, all):               0.48  0.48
    
    Estimated twin fraction from Murray-Rust plot for -h,-k,l operator (strong, all):                0.00  0.08
    
    Estimated twin fraction from weighted Fisher & Sweet plot for -h,-k,l operator:                  0.01
    
    Estimated twin fraction from K-L divergence of |delta-Z| probability for -h,-k,l operator:       0.00
    
    Estimated twin fraction from K-L divergence of |H| probability for -h,-k,l operator:             0.00
    
    Estimated twin fraction from Britton histogram for -k,-h,-l operator (strong, all):              0.50  0.50
    
    Estimated twin fraction from Murray-Rust plot for -k,-h,-l operator (strong, all):               0.00  0.08
    
    Estimated twin fraction from weighted Fisher & Sweet plot for -k,-h,-l operator:                 0.01
    
    Estimated twin fraction from K-L divergence of |delta-Z| probability for -k,-h,-l operator:      0.00
    
    Estimated twin fraction from K-L divergence of |H| probability for -k,-h,-l operator:            0.00
    
    Estimated twin fraction from K-L divergence of unrelated acentric |delta-Z| probability:         0.00
    
    Padilla & Yeates L test for twinning, acentric moments of |L|:
    <|L|> (normal = .500; perfect twin = .375):  0.530
    <L^2> (normal = .333; perfect twin = .200):  0.366
    
    Estimated twin fraction from K-L divergence of |L| probability:                                  0.00
    
    

  • Normalised scores from a panoply of hemihedral twinning tests.
  • For each test, the most likely hemihedral twin fraction based on the data is the one corresponding to the lowest normalised score (i.e. like the R value).  For all the distributional tests (i.e. those of the form P(x)), the raw score before normalisation is the Kullback-Leibler divergence from the theoretical to the observed probability density.  For the non-distributional Britton and Fisher & Sweet tests, it's the count of extra negative intensities obtained by detwinning the data using each possible twin fraction.  Note: click image to enlarge.



    Reference


  • VIEW the color-coded reciprocal lattice.
  • VIEW the complete job log (probably only useful for diagnosing a failed job).