In the case of unmerged data being submitted to the server
(i.e. the recommended approach), the method for merged data above
is not feasible and a different method is needed.  To this end, an
extra column (label = 'SA_flag', type = 'I') has been added to the
STARANISO output MTZ file.  SA_flag has one of 4 possible values, as
follows:
SA_flag value | Point color | Meaning*
|
---|
0 or MNF (missing) | Grey | Unobservable
|
1 | Dark blue | Observable
|
2 | Red or pink | Unobserved
|
3 | Orange through white | Observed
|
*See the GLOSSARY
for an explanation of the terminology used here.
Note that currently only values 1 and 3 are output.  This means
that the uniqueify script (or other method) can
again be used, this time on the output MTZ file from
STARANISO.  It is then necessary to select only reflections with a
valid SA_flag value (i.e. the reflections with valid data inside
the diffraction cut-off surface).  This can easily be achieved using
the CCP4 SFTOOLS
utility to select the valid reflections from the output file from
STARANISO before attempting to use the data in refinement, for
example:
sftools
|
> read input.mtz
|
> select col SA_flag present
|
> delete col SA_flag
|
> write output.mtz
|
> end
|